William Hersh, M.D.

F.A.C.P. , F.A.C.M.I. , C.P.H.I.M.S.

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Last updated: May 3, 2008
Bill

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Also, pictures from recent trips to
Egypt, Cuba, and Zimbabwe

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On April 17, 2008, I presented research findings about the health information technology (HIT) workforce to the Capitol Hill Steering Committee on Telehealth and Healthcare Informatics in Washington, DC. I was introduced by my Congressman, David Wu (D-OR), whose legislation in this area (the 10,000 Trained by 2010 Act, named after a course I developed by the same name) has passed the House but is awaiting action in the Senate. Here are some documents and links related to the event:
Some other publications I recently authored:
I have also recently given updated versions of some of my usual talks:
I also participated in a health information technology roundtable with US House Speaker Nancy Pelosi, Congressman David Wu, Oregon Governor Ted Kulongoski, OHSU President Joe Robertson, and several local informatics leaders at OHSU on November 27, 2007. I put a posting the OHSU Biomedical Informatics Blog that includes my prepared comments.

I was also featured in an executive profile in the Portland Business Journal! This publication has also featured an article about the 10x10 program.

Other recent talks (handouts with slides and references):
Other activities:
The initial offerings of the AMIA-OHSU 10x10 program have been a great success, which has been completed by nearly 400 individuals.  Read more:
I have written and talked a great deal lately about health care quality, patient safety, and the National Health Information Infrastructure (NHII):
Information about the OHSU biomedical informatics program:
I also have a number of research projects:
My fitness routine featured in our local newspaper, the Oregonian, on Feb. 9, 2004.

A Web page, with links to a voice-over-Powerpoint lecture in Flash and other resources, that provides my view of the field of medical informatics:
http://www.ohsu.edu/dmice/whatis/

A Web site for the second edition of my book at www.irbook.info. Third edition coming in 2008!

Biography

William Hersh, M.D. is Professor and Chair of the Department of Medical Informatics & Clinical Epidemiology (DMICE) in the School of Medicine at Oregon Health & Science University (OHSU) in Portland, Oregon. He also has academic appointments in the Division of General Internal Medicine of the Department of Medicine and in the Department of Public Health and Preventive Medicine at OHSU. Dr. Hersh obtained his B.S. in Biology from the University of Illinois at Champaign-Urbana in 1980 and his M.D. from the University of Illinois at Chicago in 1984. After finishing his residency in Internal Medicine at University of Illinois Hospital in Chicago in 1987, he completed a Fellowship in Medical Informatics in the Decision Systems Group at Harvard University in 1990.

Dr. Hersh has been at OHSU since 1990, where he has developed research and educational programs in biomedical informatics. He is internationally recognized for his contributions to the field. He is a Fellow of the American College of Medical Informatics and a Fellow of the American College of Physicians (ACP). Dr. Hersh is also Chair of the Working Group on Education of the International Medical Informatics Association as well as Chair of the ACP's Medical Informatics Subcommittee. He previously served as Secretary of the American Medical Informatics Association (AMIA).

Dr. Hersh's research focuses on the development and evaluation of information retrieval systems for biomedical practitioners and researchers. The majority of his research funding comes from the National Library of Medicine (NLM), the Agency for Healthcare Research and Quality, and the National Science Foundation. He has published over 100 scientific papers and is author of the book, Information Retrieval: A Health and Biomedical Perspective (Second Edition, Springer-Verlag, 2003), which has an associated Web site, www.irbook.info. Dr. Hersh serves as Editor for the Americas of the journal Information Retrieval and as Deputy Editor of the Journal of Biomedical Knowledge and Discovery. He also serves on the editorial board of several other scientific journals. He is also a member of the program committee of the Text Retrieval Conference (TREC) and currently chairs the TREC Genomics Track.

Dr. Hersh is also actively involved in clinical and translational research. He serves as Director of the Biomedical Informatics Program of the Oregon Clinical and Translational Research Institute (OCTRI), which is one of 12 centers initially funded by the Clinical and Translational Science Award (CTSA) initiative of the National Institutes of Health (NIH) to promote translational research. Dr. Hersh is also Chair of the CTSA National Informatics Steering Committee, convened by the NIH.

Dr. Hersh's work in biomedical informatics education is equally well-known. He serves as Director of OHSU's educational programs in biomedical informatics. These programs include the on-campus Master of Science, Master of Biomedical Infromatics, and PhD programs as well as the distance learning-based Graduate Certificate and Master of Biomedical Infromatics programs. He also serves as Director of the NLM-funded Fellowship in Biomedical Informatics at OHSU. Dr. Hersh also conceptualized the AMIA 10x10 Program that aims to train 10,000 health care professionals in informatics by the year 2010 and served as Director of the inaugural offering of the course.

Address

Department of Medical Informatics & Clinical Epidemiology
Oregon Health & Science University
BICC
3181 SW Sam Jackson Park Rd.
Portland, OR 97239
(voice) 503-494-4563
(fax) 503-494-4551
(email) hersh@ohsu.edu

Education

Postdoctoral Training

Professional Positions

Educational Activities

Courses Taught

Publications

Peer-Reviewed Papers

1.  Hersh WR, Kronfol NO, A microcomputer database for the outpatient hemodialysis setting, Proceedings of the American Association for Medical Systems and Informatics Congress, 1987, 129-133.

2.  Kronfol NO, Hersh WR, Barakat MM, Effects of 25(OH)-Vitamin D in hypocalcemic patients on chronic hemodialysis, Transactions of the American Society for Artificial Internal Organs, 1987, 33: 289-292.

3.  Greenes RA, Tarabar DB, Krauss M, Anderson G, Wolnik WJ, Cope L, Slosser E, Hersh WR, Knowledge management as a decision support method: a diagnostic workup strategy application, Computers and Biomedical Research, 1989, 22: 113-135.

4.  Greenes RA, Tarabar DB, Krauss M, Cope L, Slosser E, Hersh WR, Pattison-Gordon E, Abendroth T, Rathe R, Snydr-Michal J, Explorer-2: an object-oriented framework for knowledge management, MEDINFO 89, 1989, 29-33.

5.  Hersh WR, Greenes RA, SAPHIRE: an information retrieval system featuring concept matching, automatic indexing, probabilistic retrieval, and hierarchical relationships, Computers and Biomedical Research, 1990, 23: 410-425.

6.  Hersh WR, Greenes RA, Information retrieval in medicine: state of the art, M.D. Computing, 1990, 7: 302-311.

7.  Hersh WR, Pattison-Gordon E, Greenes RA, Evans DA, Adaptation of Meta-1 for use in SAPHIRE, a general-purpose information retrieval system, Proceedings of the 14th Annual Symposium on Computer Applications in Medical Care, 1990, 156-160.

8.  Hersh WR, Evaluation of Meta-1 for a concept-based approach to the automated indexing and retrieval of bibliographic and full-text databases, Medical Decision Making, 1991,11: S120-124.

9.  Evans DA, Hersh WR, Monarch IA, Lefferts RG, Handerson SK, Automatic indexing of abstracts via natural language processing using a simple thesaurus, Medical Decision Making, 1991, 11: S108-S115.

10.  Hersh WR, Hickam DH, Haynes RB, McKibbon KA, Evaluation of SAPHIRE: an automated approach to indexing and retrieving medical literature, Proceedings of the 15th Annual Symposium on Computer Applications in Medical Care, 1991, 808-812.

11.  Hersh WR, Hickam DH, A comparative analysis of retrieval effectiveness for three methods of indexing medical literature, American Journal of the Medical Sciences, 1992, 303: 293-300.

12.  Hersh WR, Evans DA, Monarch IA, Lefferts RG, Handerson SK, Gorman PN, Indexing effectiveness of linguistic and non-linguistic approaches to automated indexing, MEDINFO 92, 1992, 1402-1408.

13.  Evans DA, Chute CG, Handerson SK, Yang Y, Monarch IA, Hersh WR, Mapping vocabularies using “latent semantics,” MEDINFO 92, 1992, 1462-1468.

14.  Hersh WR, Hickam DH, Leone TJ, Words, concepts, or both: optimal indexing units for automated information retrieval, Proceedings of the 16th Annual Symposium on Computer Applications in Medical Care, 1992, 644-648.

15.  Hersh WR, Hickam DH, A comparison of two methods for indexing and retrieval from a full-text medical database, Medical Decision Making, 1993, 13: 220-226.

16.  Hersh WR, Hickam DH, Haynes RB, McKibbon KA, A performance and failure analysis of SAPHIRE with a MEDLINE test collection, Journal of the American Medical Informatics Association, 1994, 1: 51-60.

17.  Hersh WR, Relevance and retrieval evaluation: perspectives from medicine, Journal of the American Society for Information Science, 1994, 45: 201-206.

18.  Evans DA, Cimino JJ, Hersh WR, Huff SM, Bell DS, Toward a medical concept representation language, Journal of the American Medical Informatics Association, 1994, 1: 207-217.

19.  Hersh WR, Buckley C, Leone TJ, Hickam DH, OHSUMED: an interactive retrieval evaluation and new large test collection for research, Proceedings of the 17th Annual ACM SIGIR Conference on Research and Development in Information Retrieval , 1994, 192-201.

20.  Hersh WR, Hickam DH, Use of a multi-application computer workstation in a clinical setting, Bulletin of the Medical Library Association, 1994, 82: 382-389.

21.  Hersh WR, Elliot DE, Hickam DH, Wolf SL, Molnar A, Leichtenstein C, Towards new measures of information retrieval evaluation, Proceedings of the 18th Annual Symposium on Computer Applications in Medical Care , 1994, 895-899.  (Also published in Proceedings of the 18th Annual ACM SIGIR Conference on Research and Development in Information Retrieval, 1995, 164-170.)

22.  Friedman C, Huff SM, Hersh WR, Gordon EP, and Cimino JJ, The Canon Group's effort: working toward a merged model, Journal of the American Medical Informatics Association, 1995, 2: 4-18.

23.  Hersh WR, Hickam DH, An evaluation of interactive Boolean and natural language searching with an on-line medical textbook, Journal of the American Society for Information Science, 1995, 46: 478-489.

24.  Hersh WR, Hickam DH, Information retrieval in medicine: the SAPHIRE experience, Journal of the American Society for Information Science, 1995, 46: 743-747.

25.  Hersh WR, The electronic medical record: promises and problems, Journal of the American Society for Information Science, 1995, 46: 772-776.

26.  Hersh WR, Leone TJ, The SAPHIRE server, Proceedings of the 19th Annual Symposium on Computer Applications in Medical Care, 1995, 858-862.

27.  Hersh WR, Pentecost J, Hickam DH, A task-oriented approach to retrieval evaluation, Journal of the American Society for Information Science, 1996, 47: 50-56.

28.  Hersh WR, Brown KE, Donohoe LC, Campbell EM, Horacek AE, CliniWeb: managing clinical information on the World Wide Web, Journal of the American Medical Informatics Association, 1996, 3: 273-280.

29.  Hersh WR, Campbell EM, Evans DA, Brownlow ND, Empirical, automated vocabulary discovery using large text corpora and advanced natural language processing tools, Proceedings of the 1996 AMIA Annual Symposium, 1996, 159-163.

30.  Ertle AR, Campbell EM, Hersh WR, Automated application of clinical practice guidelines for asthma management, Proceedings of the 1996 AMIA Annual Symposium, 1996, 552-556.

31.  Evans DA, Brownlow ND, Hersh WR, Campbell EM, Automating concept identification in the electronic medical record:  an experiment in extracting dosage information, Proceedings of the 1996 AMIA Annual Symposium, 1996, 388-392.

32.  Spackman KA, Hersh WR, Recognizing noun phrases in medical discharge summaries: an evaluation of two natural language parsers, Proceedings of the 1996 AMIA Annual Symposium, 1996, 155-158.

33.  Hersh WR, Campbell EM, Malveau SE, Assessing the feasibility of large-scale natural language processing in a corpus of ordinary medical records: a lexical analysis, Proceedings of the 1997 AMIA Annual Symposium, 1997, 580-584.

34.  Detmer WM, Barnett GO, Hersh WR, MedWeaver: integrating decision support, literature searching, and Web exploration using the UMLS Metathesaurus, Proceedings of the 1997 AMIA Annual Symposium, 1997, 490-494.

35.  Hersh W, Leen T, Rehfuss S, Malveau S, Automatic prediction of trauma registry procedure codes from emergency room dictations, MEDINFO 98, 1998, 665-669.

36.  Hersh WR, Hickam DH, How well do physicians use electronic information retrieval systems? A framework for investigation and systematic review, Journal of the American Medical Association, 1998, 280: 1347-1352.

37.  Hersh WR, Information retrieval at the millenium, Proceedings of the 1998 AMIA Annual Symposium, 1998, 38-45.

38.  Ash JS, Gorman PN, Hersh WR, Physician order entry in U.S. hospitals, Proceedings of the 1998 AMIA Annual Symposium, 1998, 235-239.

39.  Munoz FR, Hersh WR, MCM Generator:  a Java-based tool for generating medical metadata, Proceedings of the 1998 AMIA Annual Symposium, 1998, 648-652.

40.  Zacks MP, Hersh WR, Developing search strategies for detecting high quality reviews in a hypertext test collection, Proceedings of the 1998 AMIA Annual Symposium, 1998, 663-667.

41.  Hersh WR, Donohoe LC, SAPHIRE International: a tool for cross-language information retrieval, Proceedings of the 1998 AMIA Annual Symposium, 1998, 673-677.

42.  Lowe HJ, Antipov I, Hersh WR, Smith CA, Toward knowledge-based retrieval of medical images. The role of semantic indexing, image content representation, and knowledge-based retrieval, Proceedings of the 1998 AMIA Annual Symposium, 1998, 882-886.

43.  Malet G, Munoz F, Appleyard R, Hersh WR, A model for enhancing Internet medical document retrieval with “medical core metadata,” Journal of the American Medical Informatics Association, 1999, 6: 183-208.

44.  Hersh WR, “A world of knowledge at your fingertips”: promise, reality, and future directions, Academic Medicine, 1999, 74: 30-33.

45.  Ash JS, Hersh WR, Krages KP, Morgan JE, Schumacher R, The Oregon IAIMS:  then and now, Bulletin of the Medical Library Association, 1999, 37: 347-349.

46.  Hersh W, Price S, Kraemer D, Chan B, Sacherek L, Olson D, System and user attributes associated with successful searching, Advances in Digital Libraries ’99, 1999, 60-70.

47.  Lowe HJ, Antipov I, Hersh WR, Smith CA, Representing images in the multimedia electronic medical record combining semantic indexing and image content-based representation to support knowledge-based retrieval of medical images, Methods of Information in Medicine, 1999, 38: 303-307.

48.  Hersh W, Ball A, Day B, Masterson M, Zhang L, Sacherek L, Maintaining a catalog of manually-indexed, clinically-oriented World Wide Web content, Proceedings of the 1999 AMIA Annual Symposium, 1999, 790-794.

49.  Price S, Hersh W, Filtering Web pages for quality indicators:  an empirical approach to finding high quality consumer health information on the World Wide Web, Proceedings of the 1999 AMIA Annual Symposium, 1999, 911-915.

50.  Caton K, Hersh W, Williams J, Implementation and evaluation of a virtual learning center for distributed education, Proceedings of the 1999 AMIA Annual Symposium, 1999, 491-495.

51.  Ash JS, Gorman PN, Hersh WR, Poulsen SB, Perceptions of house officers who use physician order entry, Proceedings of the 1999 AMIA Annual Symposium, 1999, 471-475.

52.  Stead WW, Miller RA, Musen M, Hersh W,  Integration and beyond: linking information from disparate sources and into workflow, Journal of the American Medical Informatics Association, 2000, 7: 135-145.

53.  Hersh W, Turpin A, Price S, Kraemer D, Chan B, Sacherek L, Olson D, Do batch and user evaluations give the same results?, Proceedings of the 23rd Annual ACM SIGIR Conference on Research and Development in Information Retrieval, 2000, 17-24.

54.  Hersh WR, Crabtree MK, Hickam DH, Sacherek L, Rose L, Friedman CP, Factors associated with successful answering of clinical questions using an information retrieval system, Bulletin of the Medical Library Association, 2000, 88: 323-331.

55.  Hersh WR, Price S, Donohoe L, Assessing thesaurus-based query expansion using the UMLS Metathesaurus, Proceedings of the 2000 Annual AMIA Fall Symposium, 2000, 344-348.

56.  Selsky D, Eisenberg F, Spena R, Hersh W, Price S, Buitendijk I, Knowledge integration: insight through the e-Portal, Journal of Healthcare Information Management, 2001, 15: 13-24.

57.  Hersh W, Turpin A, Price S, Kraemer D, Sacherek L, Olson D, Chan B, Challenging conventional assumptions of information retrieval with real users: Boolean searching and batch retrieval evaluations, Information Processing & Management, 2001, 37: 383-402.

58.  Turpin A, Hersh W, Why batch and user evaluations do not give the same results, Proceedings of the 24th Annual ACM SIGIR Conference on Research and Development in Information Retrieval, 2001, 225-231.

59.  Hersh WR, Junium K, Mailhot M, Tidmarsh P, Implementation and evaluation of a medical informatics distance learning program, Journal of the American Medical Informatics Association , 2001, 8: 570-584.

60.  Hersh WR, Helfand M, Wallace JA, Kraemer DF, Patterson PK, Shapiro SE, Greenlick MR, Clinical outcomes resulting from telemedicine interventions:  a systematic review, BMC Medical Informatics & Decision Making, 2001, 1:5.

61.  Hersh WR, Mailhot MF, Lowe HJ, Smith CA, Selective automated indexing of findings and diagnoses in radiology reports, Journal of Biomedical Informatics, 34: 262-273.

62.  Hersh WR, Medical informatics education: an alternative pathway for training the informationist, Journal of the Medical Library Association, 2002, 90: 76-79.

63.  Hersh WR, Crabtree MK, Hickam DH, Sacherek L, Friedman CP, Tidmarsh P, Moesbaek C, Kraemer D, Factors associated with success for searching MEDLINE and applying evidence to answer clinical questions, Journal of the American Medical Informatics Association, 2002, 9: 283-293.

64.  Overhage JM, Middleton B, Miller R, Zielstorff, RD, Hersh WR, Does national regulatory mandate of provider order entry, to take effect by the end of 2005, portend greater benefit than risk for health care delivery? The 2001 ACMI debate, Journal of the American Medical Informatics Association, 2002, 9: 199-208.

65.  Hersh WR, Helfand M, Wallace JA, Kraemer DF, Patterson PK, Shapiro SE, Greenlick MR, A systematic review of the efficacy of telemedicine for making diagnostic and management decisions, Journal of Telemedicine and Telecare, 2002, 8: 197-209.

66.  Hersh WR, Gorman PN, Ruback T, Implementation and evaluation of a medical informatics curriculum for physician assistant students, Perspective on Physician Assistant Education, 2002, 13: 7-10.

67.  Hersh WR, Medical Informatics: improving health care through information, Journal of the American Medical Association, 288: 1955-1958.

68.  Hersh W, Miller R, Olson, D, Sacherek L, Cross P, Professional’s Information Link (PiL): a web-based asynchronous consultation service, Proceedings of the 2002 Annual AMIA Symposium, 2002, 325-329.

69.  Tidmarsh P, Cummings J, Hersh WR, Friedman CP, Distributed medical informatics education using Internet2, Proceedings of the 2002 Annual AMIA Symposium, 2002, 787-791.

70.  Price SL, Hersh WR, Olson DD, Embi PJ, SmartQuery: context-sensitive links to medical knowledge sources from the electronic patient record, Proceedings of the 2002 Annual AMIA Symposium, 2002, 627-631.

71.  Dubay CJ, Brundege JM, Hersh W, Spackman K, Delivering bioinformatics training: bridging the gaps between computer science and biomedicine, Proceedings of the 2002 Annual AMIA Symposium, 2002, 220-224.

72.  Huang Y, Lowe HJ, Hersh WR, A pilot study of contextual UMLS indexing to improve the precision of concept-based representation in XML-structured clinical radiology reports, Journal of the American Medical Informatics Association, 2003, 10: 580-587.

73.  Turpin A, Hersh W, Do clarity scores for queries correlate with user performance?, Proceedings of the Fifteenth Australasian Database Conference, Dunedin, New Zealand, 2004, 85-91.

74.  Ash JS, Gorman PN, Seshadri V, Hersh WR, Computerized physician order entry in U.S. hospitals: results of a 2002 survey, Journal of the American Medical Informatics Association, 2004, 11:  95-99.

75.  Cohen AM, Stavri PZ, Hersh WR, A categorization and analysis of the criticisms of Evidence-Based Medicine, International Journal of Medical Informatics, 2004, 73: 35-43.

76.  Hersh W, Bhupatiraju RT, Corley S, Enhancing access to the bibliome: the TREC Genomics Track, MEDINFO 2004, 773-777.

77.  Tran D, Dubay C, Gorman P, Hersh W, Applying task analysis to describe and facilitate bioinformatics tasks, MEDINFO 2004, 818-822.

78.  Tian X,  Hersh W, Logan J, Bennett R, A database for Chinese outpatients with rheumatic diseases, MEDINFO 2004, 256-259.

79.  Cohen AM, Hersh WR, A survey of current work in biomedical text mining, Briefings in Bioinformatics, 2005, 6: 57-71.

80.  Cohen AM, Hersh WR, Dubay C, Spackman KA, Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts. BMC Bioinformatics, 2005, 6: 103.

81.  Müller H, Clough P, Hersh W, Geissbuhler A, IMAGECLEF 2004–2005:  results, experiences and new ideas for image retrieval evaluation, CBMI 2005 - Fourth International Workshop on Content-Based Multimedia Indexing, 2005.

82.  Hersh W, Evaluation of biomedical text mining systems:  lessons learned from information retrieval, Briefings in Bioinformatics, 2005, 6:  344-356.

83.  Müller H, Clough P, Hersh W, Deselaers T, Lehmann T, Geissbuhler A, Evaluation axes for medical image retrieval systems the ImageCLEF experience, ACM Multimedia 2005, 2005.

84.  Bernstam EV, Herskovic JR, Aphinyanaphongs Y, Aliferis CF, Sriram MG, Hersh WR, Using citation data to improve retrieval from MEDLINE, Journal of the American Medical Informatics Association, 2006, 13: 96-105.
 
85.  Hersh W, Who are the informaticians?  What we know and should know, Journal of the American Medical Informatics Association, 2006, 13: 166-170.

86.  Cohen AM, Hersh WR, Peterson K, Yen PY, Reducing workload in systematic review preparation using automated citation classification, Journal of the American Medical Informatics Association, 2006, 13: 206-219.

87.  Müller H, Clough P, Hersh W, Deselaers T, Lehmann T, Geissbuhler A, Using heterogeneous annotation and visual information for the benchmarking of image retrieval systems, SPIE Conference Photonics West, 2006.

88.  Nicholson D, Hersh W, Gandhi TK, Weingart SN, Bates DW, Medication errors: not just a few bad apples, Journal of Clinical Outcomes Management, 2006, 13: 114-115.

89.  Hersh WR, Bhupatiraju RT, Ross L, Johnson P, Cohen AM, Kraemer DF, Enhancing access to the bibliome: the TREC 2004 Genomics Track, Journal of Biomedical Discovery and Collaboration, 2006, 1:3.

90.  Cohen AM, Hersh WR, The TREC 2004 Genomics Track categorization task: classifying full text biomedical documents, Journal of Biomedical Discovery and Collaboration, 2006, 1:4.

91.  Hersh WR, Hickam DH, Severance SM, Dana TL, Krages KP, Helfand H, Diagnosis, access, and outcomes: update of a systematic review on telemedicine services, Journal of Telemedicine and Telecare, 2006, 12(Supp 2): 3-31.

92.  Müller H, Despont-Grosa C, Hersh W, Jensen J, Lovis C, Geissbuhler A, Health care professionals’ image use and search behaviour, Proceedings of Medical Informatics Europe 2006, CD-ROM

93.  Müller H, Clough P, Hersh W, Geissbuhler A, Variations of relevance assessments for medical image retrieval, Workshop on Adaptive Multimedia Retrieval (AMR) 2006, Springer Lecture Notes in Computer Science (LNCS 4398), Geneva, Switzerland, 2007, 233-247.

94.  Hersh WR, Müller H, Jensen J, Yang J, Gorman P, Ruch P, Advancing biomedical image retrieval: development and analysis of a test collection, Journal of the American Medical Informatics Association, 2006, 13: 488-496. (Appendix)

95.  Hersh WR, Bhupatiraju RT, Greene P, Smothers V, Cohen C, Adopting e-learning standards in health care: competency-based learning in the medical informatics domain, Proceedings of the AMIA 2006 Annual Symposium, 2006, CD-ROM.

96. Hersh W, The full spectrum of biomedical informatics education at Oregon Health & Science University, Methods of Information in Medicine, 2007, 46: 80-83.

97. Herskovic JR, Tanaka LY, Hersh W, Bernstam EV, A day in the life of PubMed: analysis of a typical day’s query log, Journal of the American Medical Informatics Association, 2007, 14: 212-220.

98. Hersh W, Williamson J, Educating 10,000 informaticians by 2010: the AMIA 10x10 program, International Journal of Medical Informatics, 2007, 76: 377-382.

99. Müller H, Boyer C, Gaudinat A, Hersh W, Geissbuhler A, Analyzing web log files of the Health on the Net HONmedia search engine to define typical image search tasks for image retrieval evaluation, MEDINFO 2007, 1319-1323.

100. Otero P, Hersh W, Luna D, López Osornioa A, Bernaldo de Quirósa FG, Langlois E, Marchetti M, Translation, implementation and evaluation of a medical informatics distance learning course for Latin America, MEDINFO 2007, CD-ROM P421. (slides)

101. Kalpathy-Cramer J, Hersh W, Automatic image modality based classification and annotation to improve medical image retrieval, MEDINFO 2007, 1334-1338.

102. Yang J, Cohen AM, Hersh W, Automatic summarization of mouse gene information by clustering and sentence extraction from MEDLINE abstracts, Proceedings of the AMIA 2007 Annual Symposium, 2007, CD-ROM.

103. Rekapalli HK, Cohen, AM, Hersh W, A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task, Proceedings of the AMIA 2007 Annual Symposium, 2007, CD-ROM.

104. Bhupatiraju RT, Hersh WR, Smothers V, Fordis M, Greene PS, The MERG Suite: tools for discovering competencies and associated learning resources, BMC Source Code for Biology and Medicine, in press.

105. Altman R, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh, WR,  Hirschman L, Jensen LJ, Krallinger M, Mons B, O’Donoghue SI, Peitsch M, Rebholz-Schumann D, Shatkay H, Valencia A, Text mining for biology: the way forward opinions from leading scientists, Genome Biology, in press.

Other Papers

1.  Hersh WR, Informatics: design and evaluation of information technology in medicine, Journal of the American Medical Association,  1992, 267: 167, 170.

2.  Evans DA, Lefferts RG, Grefenstette G, Handerson SK, Hersh WR, Archbold AA, CLARIT TREC Design, Experiments, and Results, Proceedings of the First Text Retrieval Conference (TREC-1), 1993, 251-286.

3.  Hersh WR, Lunin LA, Perspectives on medical informatics: information technology in health care, Journal of the American Society for Information Science, 1995, 46: 726-728.

4.  Hersh WR, Day B, A comparison of Boolean and natural language searching for the TREC-6 interactive task, Proceedings of the Sixth Text Retrieval Conference (TREC-6), Gaithersburg, MD, 1998, 585-595.

5.  Hersh W, Price S, Kraemer D, Chan B, Sacherek L, Olson D, A large-scale comparison of Boolean and natural language searching for the TREC-7 interactive track, Proceedings of the Seventh Text Retrieval Conference (TREC-7), Gaithersburg, MD, 1999, 491-500.

6.  Hersh WR, OHSU’s 2-for-1 proposition:  the fusion of medical informatics and outcomes research, M.D. Computing, 1999, 16(5): 35-37.

7.  Hersh W, Over P, TREC-8 interactive track overview, Proceedings of the Eighth Text Retrieval Conference (TREC-8), Gaithersburg, MD, 2000, 57-64.

8.  Hersh WR, The quality of information on the World Wide Web, Journal of the American College of Dentists, 1999, 66: 43-45.

9.  Hersh W, Turpin A, Sacherek L, Olson D, Price S, Further analysis of whether batch and user evaluations give the same results with a question-answering task, Proceedings of the Ninth Text Retrieval Conference (TREC-9), Gaithersburg, MD, 407-416.

10.  Hersh W, Over P, SIGIR workshop on interactive retrieval at TREC and beyond, SIGIR Forum, Spring 2000.

11.  Hersh W, Over P, TREC 2001 interactive track structure, Proceedings of the Text Retrieval Conference (TREC) 2001, Gaithersburg, MD, 38-41.

12.  Hersh W, Sacherek L, Olson D, Observations of searchers:  OHSU TREC 2001 interactive track, Proceedings of the Text Retrieval Conference (TREC) 2001, Gaithersburg, MD, 434-441.

13.  Hersh W, Medical Informatics: a career for librarians, Info Career Trends, 2002.

14.  Hersh W, Over P, TREC 2002 interactive track report, Proceedings of the Text Retrieval Conference (TREC) 2002, Gaithersburg, MD, 40-45.

15.  Hersh W, Sacherek L, Olson D, More statistical power needed:  The OHSU TREC 2002 interactive track experiments, Proceedings of the Text Retrieval Conference (TREC) 2002, Gaithersburg, MD, 505-511.

16.  Hersh WR, Bhupatiraju RT, TREC genomics track overview, The Twelfth Text Retrieval Conference - TREC 2003, 14-23.

17.  Hersh WR, Bhupatiraju RT, Price SL, Phrases, boosting, and external knowledge resources for genomic information retrieval, The Twelfth Text Retrieval Conference - TREC 2003, 503-509.

18.  Hersh W, Anytime, anywhere medical records:  the National Health Information Infrastructure (NHII), Oregon’s Future, 2004, 5(1):  36-38.

19.  Hersh W, It takes a village to achieve the benefits of electronic health records, Oregon’s Future, 2004, 5(2):  40-41.

20.  Hersh W, Bhupatiraju RT, Ross L, Johnson P, Cohen AM, Kraemer DF, TREC 2004 genomics track overview, The Thirteenth Text Retrieval Conference - TREC 2004, 13-24.

21.  Cohen AM, Bhupatiraju RT, Hersh W, Feature generation, feature selection, classifiers, and conceptual drift for biomedical document triage, The Thirteenth
Text Retrieval Conference - TREC 2004.

22.  Hersh W, Distance learning in biomedical informatics. ACM eLearn Magazine, 2004.

23.  Hersh W, The full spectrum of biomedical informatics education at OHSU, Proceedings of the European Federation of Medical Informatics Special Topic Conference 2005, 49-51.

24.  Hersh WR, Jensen J, Müller H, Ruch P, Gorman P, A qualitative task analysis of biomedical image use and retrieval, Proceedings of the Workshop on Image and Video Retrieval Evaluation, 11-16.

25.  Jensen JR, Hersh WR, Manual query modification and data fusion for medical image retrieval, in Peters C, Gey FC, Gonzalo J, Müller H, Jones GJF, Kluck M, Magnini B, de Rijke M, 6th Workshop of the Cross-Language Evaluation Forum, CLEF 2005, Springer Lecture Notes in Computer Science, 673-679.

26.  Clough P, Müller H, Deselaers T, Grubinger M, Lehmann, Jensen J, Hersh W, The CLEF 2005 Cross-Language Image Retrieval Track, in Peters C, Gey FC, Gonzalo J, Müller H, Jones GJF, Kluck M, Magnini B, de Rijke M, 6th Workshop of the Cross-Language Evaluation Forum, CLEF 2005, Springer Lecture Notes in Computer Science, 535-557.

27.  Hersh W, Cohen AM, Yang J, Bhupatiraju RT, Roberts P, M. Hearst M, TREC 2005 genomics track overview, The Fourteenth Text Retrieval Conference - TREC 2005.

28.  Cohen AM, Yang J, Hersh WR, A comparison of techniques for classification and ad hoc retrieval of biomedical documents, The Fourteenth Text Retrieval Conference - TREC 2005.

29. Hersh W, What is the right medical informatics training for me? - a case study from Oregon Health & Science University, in e-Health & Medical IT Solutions, 2006.

30. Hersh W, Kim E, The impact of relevance judgments and data fusion on results of image retrieval test collections, Proceedings of the Second MUSCLE/ImageCLEF Workshop on Image and Video Retrieval Evaluation, 2006, 29-38.

31. Hersh W, Kalpathy-Cramer J, Jensen J, Medical image retrieval and automated annotation: OHSU at ImageCLEF 2006, in Peters C, Clough P, Gey F, Karlgren J, Magnini B, Oard DW, de Rijke M, Stempfhuber M, Evaluation of Multilingual and Multi-modal Information Retrieval - 7th Workshop of the Cross-Language Evaluation Forum, CLEF 2006, Springer Lecture Notes in Computer Science, Vol. 4730, 660-669.

32. Müller H, Deselaers T, Lehmann, Clough P, Kim E, Hersh W, Overview of the ImageCLEFmed 2006 medical retrieval and annotation tasks, in Peters C, Clough P, Gey F, Karlgren J, Magnini B, Oard DW, de Rijke M, Stempfhuber M, Evaluation of Multilingual and Multi-modal Information Retrieval - 7th Workshop of the Cross-Language Evaluation Forum, CLEF 2006, Springer Lecture Notes in Computer Science, Vol. 4730, 595-608.

33. Hersh W, Cohen AM, Roberts P, Rekapalli HP, TREC 2006 Genomics Track overview, The Fifteenth Text Retrieval Conference - TREC 2006. 

34. Cohen AM, Yang J, Fisher S, Roark B, Hersh WR, Combining lexicon expansion, information retrieval, and cluster-based ranking for biomedical question answering, The Fifteenth Text Retrieval Conference - TREC 2006, 52-78

35. Hersh W, Müller H, Image retrieval in medicine: the ImageCLEF medical image retrieval evaluation, ASIST Bulletin, February/March 2007.

36. Hersh W. Copy and paste. AHRQ WebM&M, July/August 2007.

37. Hersh WR, Müller H, Kalpathy-Cramer J, Kim E, Consolidating the ImageCLEF medical task test collection: 2005-2007, Proceedings of the Third MUSCLE/ImageCLEF Workshop on Image and Video Retrieval Evaluation, 2006, 31-39.

38. Müller H, Deselaers T, Kim E, Kalpathy-Cramer J, Deserno TM, Hersh W, Overview of the ImageCLEF 2007 medical retrieval and annotation tasks, Working Notes for the CLEF 2007 Workshop, 2007.

39. Kalpathy-Cramer J, Hersh W, Medical image retrieval and automatic annotation: OHSU at ImageCLEF 2007, Working Notes for the CLEF 2007 Workshop, 2007.

40. Hersh W, Cohen AM, Roberts P, TREC 2007 Genomics Track overview, The Sixteenth Text Retrieval Conference - TREC 2007.

41. Cohen AM, Yang J, Fisher S, Roark B, Hersh WR, The OHSU biomedical question answering system framework, The Sixteenth Text Retrieval Conference - TREC 2007.

Books

1.  Hersh WR, Information Retrieval: A Health and Biomedical Perspective, New York: Springer-Verlag.
- 1st Edition, 1996
- 2nd Edition, 2003

2.  Lindell CK, Hersh WR, Internet Medical & Health Searching & Sources Guidebook, Osceola, WI:  KC Press.
- 1st Edition, 1998
- 2nd Edition, 1999
- 3rd (Millenium) Edition, 2000
- 4th Edition, 2001
- 5th Edition, 2002

3.  Chen H, Fuller S, Friedman C, Hersh W (eds.), Medical Informatics: Knowledge Management and Data Mining in Biomedicine, New York:  Springer-Verlag, 2005.

Book Chapters

1.  Hersh WR, Detmer WM, Frisse ME, Information-Retrieval Systems , in Shortliffe EH, Perreault LE, Wiederhold G, Fagan LM (eds.), Medical Informatics: Computer Applications in Health Care and Biomedicine (2nd Edition) , New York:  Springer-Verlag, 2000, 539-572.

2.  Hersh WR, Stavri PS, Detmer WM, Information Retrieval & Digital Libraries, in Shortliffe EH, Cimino JJ (eds.), Biomedical Informatics: Computer Applications in Health Care and Biomedicine (3rd Edition), New York:  Springer-Verlag, 2005, in press.

3.  Hersh WR, Ontologies for Information Retrieval, in Jorde LB, Little P, Dunn M, Subramaniam S (eds.), Genetics, Genomics, Proteomics, and Bioinformatics, London:  John Wiley & Sons, 2004, in press.

4.  Chen H, Fuller S, Friedman C, Hersh W, Knowledge Management, Data Mining, and Text Mining in Medical Informatics, in Chen H, Fuller S, Friedman C, Hersh W (eds.), Medical Informatics: Knowledge Management and Data Mining in Biomedicine, New York:  Springer-Verlag, 2005, 3-33.

5.  Hersh WR, Information Retrieval & Digital Libraries, in Chen H, Fuller S, Friedman C, Hersh W (eds.), Medical Informatics: Knowledge Management and Data Mining in Biomedicine, New York:  Springer-Verlag, 2005, 237-275.

6
.  Hersh WR, The Full Spectrum of Biomedical Informatics Research and Education at OHSU, in Haux R, Kulikowski C (eds.), Yearbook of Medical Informatics 2005, Schattauer, 2005, 167-172.

7. Hersh W, Evaluating Interactive Question Answering, in Strzalkowski, T, Harabagiu, S (eds.), Advances in Open Domain Question Answering, New York: Springer-Verlag, 2006, 431-456.

8. Bernstam EV, Herskovic JR, Hersh WR, Query log analysis in biomedicine, in Jansen BJ, Spink A, Taksa I (eds.), Handbook of Web Log Analysis. Hershey, PA: IGI Global, in press.

Reports

1.  Hersh WR, Helfand M, Wallace JA, Kraemer DF, Patterson PK, Shapiro SE, Greenlick MR, Chan BKS, Eilers GM, Telemedicine for the Medicare Population. Summary, Evidence Report/Technology Assessment: Number 24. AHRQ Publication Number 01-E011, February 2001. Agency for Healthcare Research and Quality, Rockville, MD. http://www.ahrq.gov/clinic/epcsums/telemedsum.htm.

2.  Hersh WR, Wallace JA, Patterson PK, Kraemer DF, Nichols WP, Greenlick MR, Krages KP, Helfand M, Telemedicine for the Medicare Population: Pediatric, Obstetric, and Clinician-Indirect Home Interventions. Summary, Evidence Report/Technology Assessment: Number 24, Supplement. AHRQ Publication Number 01-E059, August 2001. Agency for Healthcare Research and Quality, Rockville, MD. http://www.ahrq.gov/clinic/epcsums/telmedsup.htm.

3.  Hickam DH, Severance S, Feldstein A, Ray L, Gorman P, Schuldheis S, Hersh WR, Krages KP, Helfand M, The Effect of Health Care Working Conditions on Patient Safety. Summary, Evidence Report/Technology Assessment: Number 74. AHRQ Publication No. 03-E024, March 2003. Agency for Healthcare Research and Quality, Rockville, MD. http://www.ahrq.gov/clinic/epcsums/worksum.htm.

4.  Hersh WR, Hickam DH, Severance S, Dana T, Krages S, Helfand M, Telemedicine for the Medicare Population (Update). Summary, Evidence Report/Technology Assessment. Agency for Healthcare Research and Quality, Rockville, MD.
http://www.ahrq.gov/clinic/tp/telemeduptp.htm.

Editorials and Introductions

1.  Hersh WR, Evidence-based medicine and the Internet, ACP Journal Club, 1996, 5(4): A14-A16.

2.  Hersh W, Rindfleisch T, Electronic publishing of scholarly communication in the biomedical sciences, Journal of the American Medical Informatics Association, 2000, 7: 324-325.

3.  Hersh W, Over P, Interactivity at the Text Retrieval Conference (TREC), Information Processing and Management, 2001, 37: 365-367.

4.  Hersh WR, Patterson PK, Kraemer DF, Telehealth: the need for evaluation redux, Journal of the American Medical Informatics Association , 2001, 9: 89-90.

5.  Hersh WR, Gorman PN, Teach globally, learn locally: the 2003 IMIA Working Group on Education Meeting, International Journal of Medical Informatics, 73: 95-96.

6.  Cohen AM, Hersh WR, Criticisms of evidence-based medicine, Evidence-Based Cardiovascular Medicine, 2004, 8: 197-198.

7.  Hersh W, Health care information technology: progress and barriers, Journal of the American Medical Association, 2004, 292: 2273-2274.

8.  Hersh W, Ubiquitous but unfinished: on-line information retrieval systems, Medical Decision Making, 2005, 25: 147-148.

9.  Hersh WR, Hickam DH, Erlichman M, Advancing the evidence base of telemedicine: overview of supplement, Journal of Telemedicine and Telecare, 2006, 12(Supp 2): 1-2.

10. Hersh WR, Adding value to the electronic health record through secondary use of data for quality assurance, research, and surveillance, American Journal of Managed Care, 2007, 13: 41-42.

Abstracts

1.  Rose B, Hersh WR, Greenes RA, Rush J,  Consultant:  A question-driven, computer-based medical and nephrological information system, Kidney International, 1989, 37: 283.

2.  Hersh, WR, Hickam DH, Impact of a computerized information system in a university general medicine clinic, Clinical Research, 1992, 40: 567A.

3.  Zacks M, Hersh W, Indexing the Cochrane systematic reviews, Colloquium Handbook, Fourth International Cochrane Colloquium, Adelaide, Australia, 1996, A-19.

4. Brodner R, Hersh W, Helfand M, Brown B, ORCAS:  Network-based management of cancer clinical trials, Proceedings of the 1997 AMIA Annual Symposium, 1997, 915.

5.  Lowe HJ, Hersh W, Smith CA, The multimedia medical record as a virtual library:  a multidimensional model for indexing the content of medical images using the Unified Medical Language System, Final Program and Abstract Book, 1998 AMIA Annual Spring Congress, 1998, 83.

6.  Hersh WR, Price S, Identifying randomized controlled trials in conference proceedings abstracts.  Abstract Book, Sixth International Cochrane Colloquium, 1998, 52.

7.  Hersh WR, Malveau SE, DynamiQuest:  a system for asking clinical examination questions based on content viewed, Proceedings of the 1998 AMIA Annual Symposium, 1998, 1013.

8.  Huey CG, Hersh WR, A needs assessment of a web-based smoking cessation program, Proceedings of the 1998 AMIA Annual Symposium, 1998, 1020.

9.  Rose LL, Crabtree K, Hersh WR, Factors influencing successful use of information retrieval systems by nurse practitioner students, Proceedings of the 1998 AMIA Annual Symposium, 1998, 1067.

10.  Hersh W, Zhang L, Teaching English medical terminology using the UMLS Metathesaurus and World Wide Web, Proceedings of the 1999 AMIA Annual Symposium, 1999, 1078.

11.  Patterson PK, Salveson C, Hersh W, Duell PB, Carlson J, Videophones for wellness coaching in an overweight population, Proceedings of the 1999 AMIA Annual Symposium, 1999, 1136.

12.  Hersh WR, Web-based distance learning in medical informatics, Conference Notebook:  Blending People & Technology to Improve Practice - Conference on Public Health Informatics & Distance Learning, New Orleans, LA, 2000.

13.  Lyman JA, Hersh W, Spackman K, Representing clinical information in an internal medicine teaching image database, Proceedings of the 2000 Annual AMIA Symposium, 2000, 1074.

14.  Hersh WR, Helfand M, Shapiro SE, Wallace JA, Eilers GM, Coverage and quality of diagnostic and outcomes studies of telemedicine services, Abstract Book, Eighth International Cochrane Colloquium, 2000, 49.

15.  Gong Y, Hersh W, A Preliminary Trial of tagging on-line documents using “Medical Core Metadata,” Proceedings of the 2001 AMIA Annual Symposium, 914.

16.  Cummings J, Tidmarsh P, Hersh W, Friedman C, Distributed medical informatics education using Internet2, Proceedings of the 2001 AMIA Annual Symposium, 887.

17.  Price S, Logan J, Hersh W, The role of computer science and computing skills in a medical informatics curriculum, Proceedings of the 2001 AMIA Annual Symposium, 1003.

18.  Hiruki T, Olson D, Onogi Y, Hersh W, An automated MeSH mapping tool to facilitate searching of the English-language Web by Japanese users, Technology and Health Care, 2001, 9:  495-496.

19.  Turpin A, Hersh W, User interface effects in past batch versus user experiments, Proceedings of the 25th Annual ACM SIGIR Conference on Research and Development in Information Retrieval, 2002, 431-432.

20.  Hersh WR, Text Retrieval Conference (TREC) Genomics Pre-Track, Pacific Symposium on Biocomputing, 2003, 83.

21.  Hersh W, Tidmarsh P, Ilg A, Distance learning in medical informatics:  who, what, and why?, Proceedings of the 2003 International Medical Informatics Association Working Group on Education Conference, 2003, CD-ROM.

22.  Yackel TR, Gorman P, Ilg A, Ash J, Audiss D, Hersh W, Teaching applied informatics:  the benefits of an internship model, Proceedings of the 2003 International Medical Informatics Association Working Group on Education Conference, 2003, CD-ROM.

23.  Rose E, Zeiger R, Corley S, Gorman P, Yackel T, Hersh W, Development methodology for a “next generation” medical informatics curriculum for clinicians, Proceedings of the 2003 AMIA Annual Symposium, 986.

24.  Hersh WR, Bhupatiraju RT, Greene PS, Smothers V, Cohen C, A standards-based approach for facilitating discovery of learning objects at the point of care, Proceedings of the AMIA 2005 Annual Symposium, CD-ROM.

25. Yang J, Cohen AM, Hersh WR, Functional gene group summarization by clustering MEDLINE abstract sentences, Proceedings of the AMIA 2006 Annual Symposium, CD-ROM.

Letters

1.  Hersh WR, Re:  Changes over time in the knowledge base of practicing internists, Journal of the American Medical Association, 1992, 267: 366.

2.  Hersh WR, Another man's poison, M.D. Computing, 1993, 10: 73-74.

3.  Hersh WR, Gorman PN, Sacherek LS, The applicability and quality of information for answering clinical questions on the World Wide Web, Journal of the American Medical Association, 1998, 280: 1307-1308.

4.  Hersh W, Reply to: Electronic information retrieval by physicians and medical librarians, Journal of the American Medical Association, 1999, 281: 1272-1273.

5.  Hersh W, The telemedicine curriculum, Journal of Telemedicine and Telecare, 2003, 9: 353-354.

Reviews

1.  Hersh WR, Review of:  Collen, MF, A History of Medical Informatics in the United States: 1950 to 1990 , Bethesda, MD:  American Medical Informatics Association, 1995, Annals of Internal Medicine, 1996, 124: 937.

2.  Hersh WR, Review of:  Berg M, Rationalizing Medical Work:  Decision-Support Techniques and Medical Practices, Cambridge, MA:  MIT Press, 1997, Information Processing and Management, 1998, 34: 133-134.

3.  Hersh WR, Review of:  Witten IH, Moffat A, Bell TC, Managing Gigabytes - Compressing and Indexing Documents and Images, San Francisco:  Morgan Kaufmann, 1999, Information Retrieval, 2001, 4:  79-83.

4.  Hersh W, The way of the future?, Review of:  Biomed Central, Nature, 2001, 413: 680.

What I do for fun...

Run...
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Ski...
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